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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015955406.1_cds_XP_016493896.1_83958
CDS Infomation

[gene=LOC107813181] [db_xref=GeneID:107813181] [protein=CSC1-like protein At3g21620] [protein_id=XP_016493896.1] [location=join(51820..52133,53074..53220,54398..54533,55047..55148,55883..56002,56118..56198,56560..56900,57025..57270,57487..57811,58430..58663,58775..59035)] [gbkey=CDS]
Sequence

ATGGCCACTCTAAGTGATATAGGTGTTGCGGCTGCTATTAACATTCTTAGTGCATGTGTG
TTTTTAATTGCATTTGCAATCCTTCGAATACAACCTGTCAATGATAGGGTATACTTCCCA
AAATGGTACCTAAAGGGTTTAAGAAGCAGTCCTTTGCACTCGGGTACAATTGTCAACAAG
TTTGTCAACTTGGACTTTCGCGCATACCTGAAGTTTCTGAATTGGATGCCTGCTGCATTG
CAAATGCCAGAACCAGAACTTATTGACCACGCAGGATTGGACTCTGCCGTCTACTTGAGG
ATTTATTTGATAGGGCTTAAAATATTTGTCCCAATTGCTTTTATTGCTTTCTCAGTCATG
GTTCCGGTTAATTGGACCAACCGTACATTGGAGCTTTCTAATTTGACTTACAGTGACTTA
GACAAGCTTTCAATTTCAAATATTCCTCTGGGATCACAGAGATTCTGGACCCATCTGGTT
ATGGCTTACATTTTTACTTTCTGGACTTGCTATGTGTTGAAAAGGGAGTATGCGATAATT
GCATCAATGAGGTTGCATTTTCTTGCATCTGAACGTCGACGACCAGATCAATTTACAGTA
CTTGTCCGAAATGTGCCACCAGATCCCGATGAATCAGTGAGTGAGCTAGTGGAGCACTTT
TTCATGGTCAACCATCAAGATCATTATTTAACTAATCAGGTTGTATACAATGCCAACAAG
CTAACAGCGCTAGTCAATGAGAAGAAGAAAAAGCAGAATTGGCTTGATTATTATCAACTC
AAGTATACTAGAAATCTGTCCAAAAGGCCCACATCAAAGACTGGTTTTCTAGGCTTATTC
GGCAAGACCGTTGATGCAATTGATTACTATACTTCTGAAATTGAAAAGCTGTCAAAAGAA
ATATCTGATGAGAGAACGAATATTATTGGGAGCTCCAAGTCTATTATGCCAGCAGCATTT
GTTTCCTTCAGAACAAGATGGGGAGCTGCTGTTTGTGCACAAACACAACAAGCCAGAAAT
CCAACGCTGTGGTTAACTGAGTGGGCTCCGGAGCCCCGTGACGTCTACTGGGATAATTTG
GCAATTCCTTATGTTTCGCTGTCAATCAGGAGGCTTATTGTTGCTGTGGCATTTTTCTTC
CTTACCTTCTTTTTCATGATCCCAATTGCATTTGTACAGTCCCTTGCTAATATAGAGGGA
ATAGAGAAAGCATTACCTTTCTTGAAATCATTGATTGAAGCTAAAGCTGTAAAATCCTTC
ATCCAGGGGTTCCTCCCTGGAATCGCGTTGAAGATTTTCCTTATCTTCCTACCTTCAATA
TTGATGCTGATGTCAAAATTTGAAGGATTTAGCTCCATATCAGCTCTTGAGAGGAGATCT
GCAACAAGATATTATATTTTTCAGTTTGTTAATGTGTTTCTTGGAAGCATCATTACTGGG
ACGGCATTTCAGCAGCTAAATAATTTCATGCATCAGTCAGCAAATGAAATACCGAAGACA
GTTGGTGTATCCATTCCGATGAAGGCAACCTTCTTCATAACTTACATAATGGTTGATGGA
TGGGCAGGAGTCGCTGGAGAGATACTTAGGTTGAAGCCATTGATTTTCTTTCACTTGAAA
AACTTCTTCCTGGTGAAGACTGAGAAGGACAGAGAAGAGGCAATGAATCCAGGAAGTCTC
GGGTTCAACACTGGTGAACCTCAGATACAGCTCTATTTCTTGCTTGGCCTTGTTTATGCT
GTTGTGTCGCCAATCCTGCTCCCTTTCATCATAGTATTTTTCGGCCTGGCATATGTTGTA
TATCGTCATCAGATTATAAATGTCTATAACCAGGAGTATGAAAGTGCTGCAGCATTCTGG
CCTGATGTGCATGGGCGCATCATAACCGCGCTCATAGTCTCTCAATTGCTTCTAATGGGA
TTGTTAAGTACAAAGGGAGCTTCTCATTCAACTCCACTGCTTATTACGCTCCCTGTACTA
ACCATTTGGTTCCATCTGTTCTGCAAAGGTCGTTATGAGCCGGCTTTCATCAGATATCCA
TTACAGGAAGCAGTGATGAAAGATACGCTAGAACGTACAAGGGAGCCAAACTTCAATTTG
AAAGAGTACCTTCAGGATGCTTATATCCACCCTGTTTTCAAAGGTGAAGAAGATATTGAG
AGTGATGCAGCCAGTGAAGATGGGAAGCTGGAACCTTCACTCGTCCCAACAAAACGCCAG
TCTCGTTTCAACACTCCATTGCCAAGCAAAAGGAGTGGTTCATCTCCTCCATTATTATCT
GATTTTGATGCAAATACGCGAGTATAG

Peptide Sequence

PEP ID

XP_016493896.1
PEP Infomation

PREDICTED: CSC1-like protein At3g21620 [Nicotiana tabacum]
Sequence

MATLSDIGVAAAINILSACVFLIAFAILRIQPVNDRVYFPKWYLKGLRSSPLHSGTIVNK
FVNLDFRAYLKFLNWMPAALQMPEPELIDHAGLDSAVYLRIYLIGLKIFVPIAFIAFSVM
VPVNWTNRTLELSNLTYSDLDKLSISNIPLGSQRFWTHLVMAYIFTFWTCYVLKREYAII
ASMRLHFLASERRRPDQFTVLVRNVPPDPDESVSELVEHFFMVNHQDHYLTNQVVYNANK
LTALVNEKKKKQNWLDYYQLKYTRNLSKRPTSKTGFLGLFGKTVDAIDYYTSEIEKLSKE
ISDERTNIIGSSKSIMPAAFVSFRTRWGAAVCAQTQQARNPTLWLTEWAPEPRDVYWDNL
AIPYVSLSIRRLIVAVAFFFLTFFFMIPIAFVQSLANIEGIEKALPFLKSLIEAKAVKSF
IQGFLPGIALKIFLIFLPSILMLMSKFEGFSSISALERRSATRYYIFQFVNVFLGSIITG
TAFQQLNNFMHQSANEIPKTVGVSIPMKATFFITYIMVDGWAGVAGEILRLKPLIFFHLK
NFFLVKTEKDREEAMNPGSLGFNTGEPQIQLYFLLGLVYAVVSPILLPFIIVFFGLAYVV
YRHQIINVYNQEYESAAAFWPDVHGRIITALIVSQLLLMGLLSTKGASHSTPLLITLPVL
TIWFHLFCKGRYEPAFIRYPLQEAVMKDTLERTREPNFNLKEYLQDAYIHPVFKGEEDIE
SDAASEDGKLEPSLVPTKRQSRFNTPLPSKRSGSSPPLLSDFDANTRV

Transcript Sequence

Gene sequence data has not been registered.